Publication detail
HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms
MUSILOVÁ, J.
Original Title
HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms
Type
conference paper
Language
English
Original Abstract
In this paper, I present the R package HomologSearch. The package serves for searching similarities between two sequences (protein or nucleotide) in a fasta format. The evaluation is computed using the BLAST algorithm and output is a table of homologous locus tags and genes (if available). The HomologSearch is available in the GitHub repository under the name ‘Jana-Mus/HomologSearch’ and can be installed as a library into the R language.
Keywords
R package; sequence similarity; sequence homology
Authors
MUSILOVÁ, J.
Released
23. 4. 2020
Publisher
Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií
Location
Brno
ISBN
978-80-214-5867-3
Book
Proceeding I of the 26th Conference STUDENT EEICT 2020
Edition number
1
Pages from
334
Pages to
338
Pages count
5
URL
BibTex
@inproceedings{BUT164301,
author="Jana {Musilová}",
title="HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and
Non-model Organisms",
booktitle="Proceeding I of the 26th Conference STUDENT EEICT 2020",
year="2020",
number="1",
pages="334--338",
publisher="Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií",
address="Brno",
isbn="978-80-214-5867-3",
url="https://www.fekt.vut.cz/conf/EEICT/archiv/sborniky/EEICT_2020_sbornik_1.pdf"
}