Publication results

• 2026

  SISLEROVA, L.; PETROVIC, M.; DOBROVOLNA, M.; ŠŤASTNÝ, J.; ROZMARIC, T.; DWORAK, H.; KRATOCHVILOVÁ, L.; VESELA, L.; SCHADL, B.; GRUBER, F.; GRILLARI, J.; FREYSTATTER, C.; OGRODNIK, M.; BRÁZDA, V. G-quadruplex motifs prediction and visualization in Sus scrofa genome. Genomics, 2026, vol. 118, iss. 1, p. 1-8.
  

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  DRÁPALOVÁ, K.; DOBROVOLNÁ, M.; KLEDUS, F.; MERGNY, J.-L.; BRÁZDA, V. Re-evaluation of G-quadruplex binding proteins from ChIP-seq datasets. Interaction Wins 2026 - International School on Innovative Therapeutic Targets in Non-Canonical Nucleic Acid Structures: Book of Abstracts. Pavia: University of Pavia, 2026. p. 36.
  

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• 2025

  KLEDUS, F.; DOBROVOLNÁ, M.; MERGNY, J.; BRÁZDA, V.;. Asymmetric distribution of G-quadruplex forming sequences in genomes of retroviruses. Scientific Reports, 2025, vol. 15, iss. 1, p. 1-12. ISSN: 2045-2322.
  

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  KRATOCHVILOVÁ, L.; DINOVÁ, A.; VALKOVÁ, N.; DOBROVOLNÁ, M.; SÁNCHES-MURCIA, PA.; BRÁZDA, V. Chromatin Immunoprecipitation Reveals p53 Binding to G-Quadruplex DNA Sequences in Myeloid Leukemia Cell Lines. ACS Bio & Med Chem Au, 2025, vol. 5, iss. 2, p. 283-298. ISSN: 2694-2437.
  

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  CUCCHIARINI, A.; DOBROVOLNÁ, M.; BRÁZDA, V.; MERGNY, J. Analysis of quadruplex propensity of aptamer sequences. Nucleic Acids Research, 2025, vol. 53, iss. 9, p. 1-11. ISSN: 1362-4962.
  

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  DOBROVOLNÁ, M.; MERGNY, J-L.; BRÁZDA, V. Complete analysis of G-quadruplex forming sequences in the gapless assembly of human chromosome Y. Biochimie, 2025, vol. 229, iss. February, p. 49-57.
  

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• 2024

  BRÁZDA, V.; VÁLKOVÁ, N.; DOBROVOLNÁ, M.; MERGNY, J. Abundance of G-Quadruplex Forming Sequences in the Hepatitis Delta Virus Genomes. ACS Omega, 2024, vol. 9, iss. 3, p. 4096-4101. ISSN: 2470-1343.
  

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  DOBROVOLNÁ, M.; ŠISLEROVÁ, L.; BRÁZDA, V.; BARTAS, M.; ČERVEŇ, J.; VALKOVÁ, N.; VOLNÁ, A.; BALDVINSSON, H.; PEČINKA, P.;. RNA analysis of the longest living vertebrate Greenland shark revealed an abundance of LINE-like elements in its transcriptome. Czech Polar Reports, 2024, vol. 13, iss. 2, p. 210-227. ISSN: 1805-0689.
  

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• 2023

  GAJARSKÝ, M.; STADLBAUER, P.; CUCCHIARINI, A.; ŠPONER, J.; DOBROVOLNÁ, M.; BRÁZDA, V.; MERGNY, J.; TRANTÍREK, L. LENARCIC ZIVKOVIC, M. DNA Quadruplex Structure with a Unique Cation Dependency. Angewandte Chemie International Edition, 2023, vol. 63, iss. 7, p. 1-11. ISSN: 1433-7851.
  

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  BRÁZDA, V.; DOBROVOLNÁ, M.; BOHÁLOVÁ, N.; MERGNY, J. G-quadruplexes in the evolution of hepatitis B virus. Nucleic Acids Research, 2023, vol. 51, iss. 14, p. 7198-7204. ISSN: 1362-4962.
  

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  Natália Bohálová, Michaela Dobrovolná, Václav Brázda, Stefan Bidula. Conservation and over-representation of G-quadruplex sequences in regulatory regions of mitochondrial DNA across distinct taxonomic sub-groups. Biochimie, 2023, vol. 194, iss. 194, p. 28-34. ISSN: 1638-6183.
  

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• 2022

  CANTARA, A.; LUO, Y.; DOBROVOLNÁ, M.; BOHALOVA, N.; FOJTA, M.; VERGA, D.; GUITTAT, L.; CUCCHIARINI, A.; SAVRIMOUTOU, S.; HÄBERLI, C.; GUILLON, J.; KEISER, J.; MERGNY, J-L.; BRÁZDA, V. G-quadruplexes in helminth parasites. Nucleic Acids Research, 2022, vol. 50, iss. 5, p. 2719-2735. ISSN: 1362-4962.
  

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  GOSWAMI, P.; ŠISLEROVÁ, L.; DOBROVOLNÁ, M.; HAVLÍK, J.; ŠŤASTNÝ, J.; BRÁZDA, V. Interaction of C-terminal p53 isoforms depends strongly upon DNA sequence and topology. Biochimie, 2022, vol. 667, iss. červen, p. 1-7. ISSN: 1638-6183.
  

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  DOBROVOLNÁ, M.; BRÁZDA, V. The Newly Sequenced Genome of Pisum sativum Is Replete with Potential G-Quadruplex-Forming Sequences-Implications for Evolution and Biological Regulation. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, vol. 23, iss. 15, p. 1-12. ISSN: 1661-6596.
  

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  DOBROVOLNÁ, M.; WARNER E. F.; BIDULA S.; BRÁZDA, V. Inverted repeats in the monkeypox virus genome are hot spots for mutation. JOURNAL OF MEDICAL VIROLOGY, 2022, vol. 95, iss. 1, p. 1-7. ISSN: 0146-6615.
  

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